http://blah3.linkedannotation.org/program

• 10:00 - 10:10 Opening remarks

  • Akiko Aizawa

• 10:10 - 10:20 Introduction to BLAH3

  • Jin-Dong Kim

• 10:20 - 11:10 Tying it all together - From terminology integration to annotation integration Keynote

  • Olivier Bodenreider

• 11:10 - 11:30 Coffee Break

• 11:30 - 11:40 BeCalm and keep BLAHing

  • Lars Juhl Jensen

• 11:40 - 11:50 An overview of the MiNCor: annotation guidelines and text corpora for MicroRNA mentions in the scientific literature

  • Josè Camilla Sammartino, Martin Krallinger and Alfonso Valencia

• 11:50 - 12:00 BioASQ and PubAnnotaion : Using linked annotations in biomedical question answering

  • *Anastasios Nentidis, Zi Yang, Mariana Neves, Jin-Dong Kim, Anastasia Krithara, George Paliouras and *Ioannis Kakadiaris

• 12:00 - 12:10 Customized automatic corpus annotations using AlvisNLP/ML

  • Robert Bossy, Mouhamadou Ba and Claire Nédellec

• 12:10 - 12:20 Towards seamless format conversion between BioC and PubAnnotation for sharing PubMed/PubMed Central documents and annotations

  • Sun Kim, Donald Comeau, Rezarta Islamaj Dogan and Zhiyong Lu

• 12:20 - 12:30 The Noctua Modeling Tool

  • Seth Carbon

• 12:30 - 14:00 Lunch

• 14:00 - 14:50 Scientific Paper Analysis: JST CREST Project on Big Data Application Keynote

  • Yuji Matsumoto

• 14:50 - 15:00 Linked Annotation Networks: Developing an Infrastructure for Inference

  • Tiffany J. Callahan and Lawrence E. Hunter

• 15:00 - 15:10 Data programming for PubAnnotation via Snorkel

  • Juan Banda

• 15:10 - 15:20 YBio M2CMT : a flexible bio-text mining tool for multi-component multi-target

  • Min Song, Sung Jeon Song, Yonghwan Kim, Kyu Bin Ahn and In Jun Baek

• 15:20 - 15:30 Annotating the SIRO model and discovering experimental protocols

  • Olga Giraldo, Alexander Garcia, Tazro Ohta and Federico Lopez

• 15:30 - 15:50 Coffee Break

• 15:50 - 16:40 Integrating biomedical data annotation in scientific publishing Keynote

  • Thomas Lemberger

• 16:40 - 16:50 Integrating PubTator in the curation pipeline of SourceData

  • Lou Götz, Nancy George, Sara El-Gebali, Anastasia Chasapi, Isaac Crespo, Ioannis Xenarios, Robin Liechti and Thomas Lemberger

• 16:50 - 17:00 BioCreative 2017 PM task: finding mutations affecting protein interactions for precision medicine

  • Zhiyong Lu

• 17:00 - 17:10 Building a cost-effective gold standard set for enriching PubAnnotation

  • Dongseop Kwon, Chih-Hsuan Wei, Sun Kim, Robert Leaman and Zhiyong Lu

• 17:10 - 17:20 Extending the interoperability of tagtog and PubAnnotation

  • Juan Miguel Cejuela and Jorge Campos

• 17:20 - 17:25 Closing