http://blah3.linkedannotation.org/program
10:00 - 10:10 Opening remarks
- Akiko Aizawa
10:10 - 10:20 Introduction to BLAH3
- Jin-Dong Kim
10:20 - 11:10 Tying it all together - From terminology integration to annotation integration Keynote
- Olivier Bodenreider
11:10 - 11:30 Coffee Break
11:30 - 11:40 BeCalm and keep BLAHing
- Lars Juhl Jensen
11:40 - 11:50 An overview of the MiNCor: annotation guidelines and text corpora for MicroRNA mentions in the scientific literature
- Josè Camilla Sammartino, Martin Krallinger and Alfonso Valencia
11:50 - 12:00 BioASQ and PubAnnotaion : Using linked annotations in biomedical question answering
- *Anastasios Nentidis, Zi Yang, Mariana Neves, Jin-Dong Kim, Anastasia Krithara, George Paliouras and *Ioannis Kakadiaris
12:00 - 12:10 Customized automatic corpus annotations using AlvisNLP/ML
- Robert Bossy, Mouhamadou Ba and Claire Nédellec
12:10 - 12:20 Towards seamless format conversion between BioC and PubAnnotation for sharing PubMed/PubMed Central documents and annotations
- Sun Kim, Donald Comeau, Rezarta Islamaj Dogan and Zhiyong Lu
12:20 - 12:30 The Noctua Modeling Tool
- Seth Carbon
12:30 - 14:00 Lunch
14:00 - 14:50 Scientific Paper Analysis: JST CREST Project on Big Data Application Keynote
- Yuji Matsumoto
14:50 - 15:00 Linked Annotation Networks: Developing an Infrastructure for Inference
- Tiffany J. Callahan and Lawrence E. Hunter
15:00 - 15:10 Data programming for PubAnnotation via Snorkel
- Juan Banda
15:10 - 15:20 YBio M2CMT : a flexible bio-text mining tool for multi-component multi-target
- Min Song, Sung Jeon Song, Yonghwan Kim, Kyu Bin Ahn and In Jun Baek
15:20 - 15:30 Annotating the SIRO model and discovering experimental protocols
- Olga Giraldo, Alexander Garcia, Tazro Ohta and Federico Lopez
15:30 - 15:50 Coffee Break
15:50 - 16:40 Integrating biomedical data annotation in scientific publishing Keynote
- Thomas Lemberger
16:40 - 16:50 Integrating PubTator in the curation pipeline of SourceData
- Lou Götz, Nancy George, Sara El-Gebali, Anastasia Chasapi, Isaac Crespo, Ioannis Xenarios, Robin Liechti and Thomas Lemberger
16:50 - 17:00 BioCreative 2017 PM task: finding mutations affecting protein interactions for precision medicine
- Zhiyong Lu
17:00 - 17:10 Building a cost-effective gold standard set for enriching PubAnnotation
- Dongseop Kwon, Chih-Hsuan Wei, Sun Kim, Robert Leaman and Zhiyong Lu
17:10 - 17:20 Extending the interoperability of tagtog and PubAnnotation
- Juan Miguel Cejuela and Jorge Campos
17:20 - 17:25 Closing